PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr028356.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family NF-X1
Protein Properties Length: 1144aa    MW: 124437 Da    PI: 8.1623
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr028356.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X119.22.7e-06330346319
     zf-NF-X1   3 kHkCqklCHeGpCppCp 19 
                  +H+C+++CH GpC+pC+
  Pbr028356.1 330 RHRCERTCHVGPCDPCQ 346
                  8***************6 PP

2zf-NF-X1201.5e-06392409118
     zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                  CG+H+C++ CH+GpC+ C
  Pbr028356.1 392 CGNHSCSEVCHPGPCGDC 409
                  ****************99 PP

3zf-NF-X117.31.1e-05546563118
     zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                  CG+H+C++lCH G CppC
  Pbr028356.1 546 CGQHSCESLCHSGHCPPC 563
                  ****************** PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500168.849158219IPR019787Zinc finger, PHD-finger
SuperFamilySSF578502.12E-7160220No hitNo description
PROSITE profilePS500899.553161217IPR001841Zinc finger, RING-type
PROSITE patternPS013590161216IPR019786Zinc finger, PHD-type, conserved site
CDDcd060081.12E-5250311No hitNo description
SMARTSM004380.023273291IPR000967Zinc finger, NF-X1-type
PfamPF014228.6275290IPR000967Zinc finger, NF-X1-type
CDDcd060089.59E-11318366No hitNo description
SMARTSM004385.8E-4328347IPR000967Zinc finger, NF-X1-type
PfamPF014222.1E-4330345IPR000967Zinc finger, NF-X1-type
CDDcd060081.40E-10382425No hitNo description
PfamPF014221.3E-4392409IPR000967Zinc finger, NF-X1-type
SMARTSM004384.4E-5392411IPR000967Zinc finger, NF-X1-type
CDDcd060084.73E-11440486No hitNo description
PfamPF014221.3E-4450467IPR000967Zinc finger, NF-X1-type
SMARTSM004387.5E-5450469IPR000967Zinc finger, NF-X1-type
CDDcd060082.34E-4498557No hitNo description
PfamPF0142219508519IPR000967Zinc finger, NF-X1-type
SMARTSM00438120508538IPR000967Zinc finger, NF-X1-type
CDDcd060081.50E-7536579No hitNo description
PfamPF014221.0E-4546563IPR000967Zinc finger, NF-X1-type
SMARTSM004380.002546565IPR000967Zinc finger, NF-X1-type
CDDcd060083.64E-6593641No hitNo description
PfamPF014224603620IPR000967Zinc finger, NF-X1-type
SMARTSM004380.023603621IPR000967Zinc finger, NF-X1-type
PfamPF014220.13656674IPR000967Zinc finger, NF-X1-type
SMARTSM004380.042656676IPR000967Zinc finger, NF-X1-type
CDDcd060087.54E-5684733No hitNo description
PfamPF0142283688710IPR000967Zinc finger, NF-X1-type
SMARTSM004380.048695716IPR000967Zinc finger, NF-X1-type
PfamPF014248.3E-5827891IPR001374R3H domain
Gene3DG3DSA:3.30.70.3301.1E-4930981IPR012677Nucleotide-binding alpha-beta plait domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0000166Molecular Functionnucleotide binding
GO:0003676Molecular Functionnucleic acid binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1144 aa     Download sequence    Send to blast
MSFHVQNERR DRSRFLAQPA TQPTQPARRE WVLRGTNPTT ATAAVNPPPV YPNPTGNVSQ  60
PNPRFNPNNL NGNLSQPNPR FNPNNLNGNA GLPNHSSVPS EIRPHRGGNN GVIKGHMGQS  120
ANHRRERGRS ENQEEKGLKD SNLPQLVQEI QDKLTKGTVE CMICYEMVRR SAPVWSCSSC  180
YSIFHLNCIK KWARAPTSID MSAEKNQGFN WRCPGCQSVQ LTSSKEIQYV CFCGKRTDPP  240
SDLYLTPHSC GEPCGKQLER EVPGKGVSKD DLCPHVCVLQ CHPGPCPPCK AFAPPRLCPC  300
GKKTITTRCS DRASVLTCGQ HCNKLLDCWR HRCERTCHVG PCDPCQVLVD ASCFCKKKVE  360
VVLCGDMTVK GEVKAEDGVF SCSSPCGKML SCGNHSCSEV CHPGPCGDCN LMPIKIKTCH  420
CGKTSLQEER RSCLDPIPTC SQLCSKSLPC EMHQCQEVCH TGDCPPCLVE VTQKCRCGST  480
SRSAECFKTT MENEKFTCDK PCGRKKNCGR HRCSERCCPL SNLNNALLGD WDPHFCSMSC  540
GKKLRCGQHS CESLCHSGHC PPCLDTIFTD LTCACGRTSI PPPLPCGTPP PSCQLPCSVP  600
QPCGHTSSHS CHFGDCPPCS VPVAKECIGG HVVLRNIPCG SRDIKCNKLC GKTRQCGMHA  660
CGRTCHPPPC DTSCLAEQGS KTSCGQICGA PRRDCRHTCT SLCHPYASCP DSRCDFPVTI  720
TCSCGRMTAS VPCNSGGSNA SFKADIVYEA SIVQRLPAPL QPIESTCKNI LLGQRKLMCD  780
DECAKRERKR VLADAFDITP PNLDALHFGE SSAVSELLSD LLRRDPKWVL SVEERCKYLV  840
LGKSRRATSG LKVHVFCPML KEKRDVVRMI AERWKLAVQA AGWEPRRFIV VHVTPKSKAP  900
ARILGVKGTI TVSAPQPPAY EHLVDMDPRL VVSFPDLPRD ADISALVLRF GGECELVWLN  960
DKNALAVFND PARAATARRR LDNGALYHGA IVVHSNGSAS MAASGSNAWG GLGTSREGGA  1020
SAVLMGNPWK KTVTQESGWR EDSWGKEEWP GSSTDAPANV WNKKAPIAAS VNRWSVLDGD  1080
TALGSSASSP RVEDSRKQSL GPLNSALDSK ASGSSSSSTL ERRPVGVIAE TPEVVDDWEK  1140
AYE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009356090.10.0PREDICTED: NF-X1-type zinc finger protein NFXL1-like
SwissprotQ9SY590.0NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1
TrEMBLM5WEA90.0M5WEA9_PRUPE; Uncharacterized protein
STRINGVIT_17s0000g01920.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF69723145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10170.10.0NF-X-like 1